

浏览全部资源
扫码关注微信
1.南京汉欣医药科技有限公司,江苏 南京 210033
2.江南大学,未来食品科学中心,江苏 无锡 214122
3.江南大学生物工程学院,工业生物技术教育部重点实验室,江苏 无锡 214122
4.江南大学生物工程学院,糖化学与生物技术教育部重点实验室,江苏 无锡 214122
Received:28 August 2024,
Revised:2024-11-11,
Published:30 April 2025
移动端阅览
汤传根, 王璟, 张烁, 张昊宁, 康振. 功能肽合成和挖掘策略研究进展[J]. 合成生物学, 2025, 6(2): 461-478
TANG Chuan′gen, WANG Jing, ZHANG Shuo, ZHANG Haoning, KANG Zhen. Advances in synthesis and mining strategies for functional peptides[J]. Synthetic Biology Journal, 2025, 6(2): 461-478
汤传根, 王璟, 张烁, 张昊宁, 康振. 功能肽合成和挖掘策略研究进展[J]. 合成生物学, 2025, 6(2): 461-478 DOI: 10.12211/2096-8280.2024-067.
TANG Chuan′gen, WANG Jing, ZHANG Shuo, ZHANG Haoning, KANG Zhen. Advances in synthesis and mining strategies for functional peptides[J]. Synthetic Biology Journal, 2025, 6(2): 461-478 DOI: 10.12211/2096-8280.2024-067.
功能肽是由2~50个氨基酸组成的短链肽,近年来因其特异性强、作用迅速及副作用低而成为开发新药和功能原料的重要研究热点。首先,本文梳理了功能肽的分类、作用机制及应用场景,总结了不同类型功能肽的特点和在生物医药、食品科学及化妆品等领域的应用。接着,针对功能肽的合成方法,探讨了化学合成与生物合成的最新进展,比较了这两种制备工艺的优缺点以及各自的适用场景。在功能肽挖掘策略方面,本文综述了噬菌体表面展示技术、机器学习算法、分子对接技术及人工智能技术等方面的最新研究,这些技术在功能肽的筛选和设计中展现出重要潜力,提升了研究的效率与准确性。展望未来,功能肽的研究将面临新的挑战与机遇。如何改进合成工艺以提高效率,如何通过结构修饰提高功能肽稳定性,以及如何利用计算机辅助优化和人工智能设计多功能肽,将成为重要的研究方向。同时,加强功能肽的安全性和有效性的评估能进一步提升功能肽的应用潜力。
Functional peptides are short chain peptides composed of 2 to 50 amino acids
and their biological activities are closely related to their amino acid sequences
chain length
and structural architectures. Functional peptides can play a regulatory role in a variety of physiological processes by specifically recognizing and binding to target molecules
in vivo
. Due to their rapid action
strong specificity
less side effect and toxicity
functional peptides have shown great application potentials in many
fields such as biomedicine
food science and cosmetics. For example
in the field of biomedicine
functional peptides can be used as the basic material of antimicrobe
anticancer
immune regulation and other therapeutic factors. In the food industry
they are used as natural supplements to enhance nutritional value for health benefit. In the field of cosmetics
functional peptides are widely used for the anti-aging
moisturizing
and repairing of the skin. In this paper
we discuss the ways of obtaining functional peptides
mainly including protein hydrolysis
chemical synthesis
and biosynthesis (
e.g
.
through microbial recombinant expression technology)
and compare their advantages and disadvantages and respective application scenarios. In terms of strategies for mining functional peptides
we review the latest research progress including phage surface display
machine learning algorithm
molecular docking and artificial intelligence. These techniques show significant potentials in the screening and design of functional peptides. In recent years
the rapid development of synthetic biology and the wide applications of bioinformatics and artificial intelligence have provided new ideas and strategies for the discovery and optimization of functional peptides
making it possible to screen functional peptides through machine learning and high throughput. Looking forward to the future
the research of functional peptides will face new challenges and opportunities. Improving the synthesis process for high efficiency
improving the stability of functional peptides through structural modifications
and using computer-aided optimization and artificial intelligence to design multifunctional peptides will become important research directions. At the same time
strengthening the safety and efficacy assessment of functional peptides can further enhance the applications of functional peptides.
2
HARTMANN R , MEISEL H . Food-derived peptides with biological activity: from research to food applications [J ] . Current Opinion in Biotechnology , 2007 , 18 ( 2 ): 163 - 169 .
KITTS D D , WEILER K . Bioactive proteins and peptides from food sources. Applications of bioprocesses used in isolation and recovery [J ] . Current Pharmaceutical Design , 2003 , 9 ( 16 ): 1309 - 1323 .
HANCOCK R E W , SAHL H G . Antimicrobial and host-defense peptides as new anti-infective therapeutic strategies [J ] . Nature Biotechnology , 2006 , 24 ( 12 ): 1551 - 1557 .
WANG G S , LI X , WANG Z . APD3: the antimicrobial peptide database as a tool for research and education [J ] . Nucleic Acids Research , 2016 , 44 ( D1 ): D1087 - D1093 .
MENDIS E , RAJAPAKSE N , BYUN H G , et al . Investigation of jumbo squid ( Dosidicus gigas ) skin gelatin peptides for their in vitro antioxidant effects [J ] . Life Sciences , 2005 , 77 ( 17 ): 2166 - 2178 .
SUETSUNA K . Antioxidant peptides from the protease digest of prawn ( Penaeus japonicus ) muscle [J ] . Marine Biotechnology , 2000 , 2 ( 1 ): 5 - 10 .
SARMADI B H , ISMAIL A . Antioxidative peptides from food proteins: a review [J ] . Peptides , 2010 , 31 ( 10 ): 1949 - 1956 .
PIHLANTO A . Antioxidative peptides derived from milk proteins [J ] . International Dairy Journal , 2006 , 16 ( 11 ): 1306 - 1314 .
FREITAS A C , ANDRADE J C , SILVA F M , et al . Antioxidative peptides: trends and perspectives for future research [J ] . Current Medicinal Chemistry , 2013 , 20 ( 36 ): 4575 - 4594 .
ZHANG X L , ZHUANG H , WU S J , et al . Marine bioactive peptides: anti-photoaging mechanisms and potential skin protective effects [J ] . Current Issues in Molecular Biology , 2024 , 46 ( 2 ): 990 - 1009 .
DOUNGAPAI C , SIRIWOHARN T , MALILA Y , et al . UV-B protective and antioxidant activities of protein hydrolysate from sea cucumber ( Holothuria scabra ) using enzymatic hydrolysis [J ] . Frontiers in Marine Science , 2022 , 9 : 892255 .
ZHANG Y H , WANG C , ZHANG W H , et al . Bioactive peptides for anticancer therapies [J ] . Biomaterials Translational , 2023 , 4 ( 1 ): 5 - 17 .
WANG L H , DONG C , LI X , et al . Anticancer potential of bioactive peptides from animal sources (Review) [J ] . Oncology Reports , 2017 , 38 ( 2 ): 637 - 651 .
SOON T N , CHIA A Y Y , YAP W H , et al . Anticancer mechanisms of bioactive peptides [J ] . Protein & Peptide Letters , 2020 , 27 ( 9 ): 823 - 830 .
PAVLICEVIC M , MARMIROLI N , MAESTRI E . Immunomodulatory peptides: a promising source for novel functional food production and drug discovery [J ] . Peptides , 2022 , 148 : 170696 .
CLEMENTE A . Enzymatic protein hydrolysates in human nutrition [J ] . Trends in Food Science & Technology , 2000 , 11 ( 7 ): 254 - 262 .
KORHONEN H , PIHLANTO A . Bioactive peptides: production and functionality [J ] . International Dairy Journal , 2006 , 16 ( 9 ): 945 - 960 .
UDENIGWE C C , ALUKO R E . Food protein-derived bioactive peptides: production, processing, and potential health benefits [J ] . Journal of Food Science , 2012 , 77 ( 1 ): R11 - R24 .
ALTMANN S E , JONES J C , SCHULTZ-CHERRY S , et al . Inhibition of Vaccinia virus entry by a broad spectrum antiviral peptide [J ] . Virology , 2009 , 388 ( 2 ): 248 - 259 .
WANG Y G , WANG X , ZHANG Y F , et al . RGD-modified polymeric micelles as potential carriers for targeted delivery to integrin-overexpressing tumor vasculature and tumor cells [J ] . Journal of Drug Targeting , 2009 , 17 ( 6 ): 459 - 467 .
NGOC L T N , MOON J Y , LEE Y C . Insights into bioactive peptides in cosmetics [J ] . Cosmetics , 2023 , 10 ( 4 ): 111 .
ZHAO W , YANG A Q , WANG J , et al . Potential application of natural bioactive compounds as skin-whitening agents: a review [J ] . Journal of Cosmetic Dermatology , 2022 , 21 ( 12 ): 6669 - 6687 .
SURYANINGTYAS I T , JE J Y . Bioactive peptides from food proteins as potential anti-obesity agents: mechanisms of action and future perspectives [J ] . Trends in Food Science & Technology , 2023 , 138 : 141 - 152 .
KUMAR M S . Peptides and peptidomimetics as potential antiobesity agents: overview of current status [J ] . Frontiers in Nutrition , 2019 , 6 : 11 .
MUTTENTHALER M , KING G F , ADAMS D J , et al . Trends in peptide drug discovery [J ] . Nature Reviews Drug Discovery , 2021 , 20 ( 4 ): 309 - 325 .
MERRIFIELD R B . Solid phase peptide synthesis. Ⅰ. The synthesis of a tetrapeptide [J ] . Journal of the American Chemical Society , 1963 , 85 ( 14 ): 2149 - 2154 .
ABDILDINOVA D A , KURTH P M J , GONG P Y . Solid-phase synthesis of peptidomimetics with peptide backbone modifications [J ] . Asian Journal of Organic Chemistry , 2021 , 10 ( 9 ): 2300 - 2317 .
ZHANG R F , YAN H , WANG X J , et al . Screening of a short chain antimicrobial peptide - FWKFK and its application in wound healing [J ] . Biomaterials Science , 2023 , 11 ( 5 ): 1867 - 1875 .
SABANA I , NAUFAL M , WIANI I , et al . Synthesis of antioxidant peptide SCAP1 (Leu-Ala-Asn-Ala-Lys) [J ] . Egyptian Journal of Chemistry , 2020 , 63 ( 3 ): 921 - 926 .
BAHARLOUI M , MIRSHOKRAEE S A , MONFARED A , et al . Design and synthesis of novel triazole-based peptide analogues as anticancer agents [J ] . Iranian Journal of Pharmaceutical Research , 2019 , 18 ( 3 ): 1299 - 1308 .
WALEWSKA A , KOSIKOWSKA-ADAMUS P , TOMCZYKOWSKA M , et al . Improving fmoc solid phase synthesis of human beta defensin 3 [J ] . International Journal of Molecular Sciences , 2022 , 23 ( 20 ): 12562 .
COLLINS J M , SINGH S K , WHITE T A , et al . Total wash elimination for solid phase peptide synthesis [J ] . Nature Communications , 2023 , 14 ( 1 ): 8168 .
BARREDO-VACCHELLI G R , RODRÍGUEZ J A , ELOY J A , et al . A novel method for liraglutide synthesis and purification [J ] . Peptide Science , 2024 , 116 ( 5 ): e24351 .
CHRISTOU G A , KATSIKI N , BLUNDELL J , et al . Semaglutide as a promising antiobesity drug [J ] . Obesity Reviews , 2019 , 20 ( 6 ): 805 - 815 .
PENG D Z , LI Y , SI L L , et al . A two-step method preparation of semaglutide through solid-phase synthesis and inclusion body expression [J ] . Protein Expression and Purification , 2024 , 219 : 106477 .
ANDRAOS J , MUHAR H , SMITH S R . Beyond glycemia: comparing tirzepatide to GLP-1 analogues [J ] . Reviews in Endocrine & Metabolic Disorders , 2023 , 24 ( 6 ): 1089 - 1101 .
FREDERICK M O , BOYSE R A , BRADEN T M , et al . Kilogram-scale GMP manufacture of tirzepatide using a hybrid SPPS/LPPS approach with continuous manufacturing [J ] . Organic Process Research & Development , 2021 , 25 ( 7 ): 1628 - 1636 .
ROSENSTOCK J , FRIAS J , JASTREBOFF A M , et al . Retatrutide, a GIP, GLP-1 and glucagon receptor agonist, for people with type 2 diabetes: a randomised, double-blind, placebo and active-controlled, parallel-group, phase 2 trial conducted in the USA [J ] . The Lancet , 2023 , 402 ( 10401 ): 529 - 544 .
KENT S B H . Chemical synthesis of peptides and proteins [J ] . Annual Review of Biochemistry , 1988 , 57 : 957 - 989 .
DAWSON P E , MUIR T W , CLARK-LEWIS I , et al . Synthesis of proteins by native chemical ligation [J ] . Science , 1994 , 266 ( 5186 ): 776 - 779 .
TYMECKA D , MISICKA A . Solution phase peptide synthesis: the case of biphalin [M/OL ] //HUSSEIN W M, SKWARCZYNSKI M, TOTH I. Peptide synthesis: peptide synthesis . New York, NY: Springer US, 2020 : 1 - 11 [2024-10-15] . https://doi.org/10.1007/978-1-0716-0227-0_1 https://doi.org/10.1007/978-1-0716-0227-0_1 .
GU X T , CHEN W J , GUO T , et al . A novel synthetic method for backbone-cyclized polypeptide POL7080 with the help of hydrophobic-support materials [J ] . Organic & Biomolecular Chemistry , 2024 , 22 ( 1 ): 85 - 89 .
LI H D , WANG L J , ZHANG L Y , et al . Scalable preparation of green C-terminal amidation peptide-synthesis TAGs and the optimized TAG-assisted liquid-phase synthesis of eptifibatide [J ] . Sustainable Chemistry and Pharmacy , 2024 , 41 : 101684 .
蔡木易 . 食源性低聚肽 [M ] . 北京 : 中国轻工业出版社 , 2021 .
CAI M Y . Food-derived oligopeptides [M ] . Beijing : China Light Industry Press , 2021 .
GU Y C , WU J P . LC-MS/MS coupled with QSAR modeling in characterising of angiotensin Ⅰ-converting enzyme inhibitory peptides from soybean proteins [J ] . Food Chemistry , 2013 , 141 ( 3 ): 2682 - 2690 .
SORNWATANA T , BANGPHOOMI K , ROYTRAKUL S , et al . Chebulin: Terminalia chebula Retz. fruit-derived peptide with angiotensin-Ⅰ-converting enzyme inhibitory activity [J ] . Biotechnology and Applied Biochemistry , 2015 , 62 ( 6 ): 746 - 753 .
WANG X M , CHEN H X , FU X G , et al . A novel antioxidant and ACE inhibitory peptide from rice bran protein: Biochemical characterization and molecular docking study [J ] . LWT , 2017 , 75 : 93 - 99 .
BABJI A S , DAUD N A , HUSAIN S G . Effect of molecular weight reduction of polypeptides on angiotensin converting enzyme (ACE) inhibitory activity in chicken skin hydrolysate (collagen) [J ] . Journal of Nutritional Therapeutics , 2014 , 3 ( 2 ): 81 - 86 .
RASLI H I , SARBON N M . Optimization of enzymatic hydrolysis conditions and characterization of Shortfin scad ( Decapterus Macrosoma ) skin gelatin hydrolysate sate using response surface methodology [J ] . International Food Research Journal , 2018 , 25 ( 4 ): 1541 - 1549 .
ZENG W C , ZHANG W H , HE Q , et al . Purification and characterization of a novel antioxidant peptide from bovine hair hydrolysates [J ] . Process Biochemistry , 2015 , 50 ( 6 ): 948 - 954 .
TAKAHASHI Y , KAMATA A , KONISHI T . Dipeptidyl peptidase-Ⅳ inhibitory peptides derived from salmon milt and their effects on postprandial blood glucose level [J ] . Fisheries Science , 2021 , 87 ( 4 ): 619 - 626 .
HENAUX L , PEREIRA K D , THIBODEAU J , et al . Glucoregulatory and anti-inflammatory activities of peptide fractions separated by electrodialysis with ultrafiltration membranes from salmon protein hydrolysate and identification of four novel glucoregulatory peptides [J ] . Membranes , 2021 , 11 ( 7 ): 528 .
CAI B N , WAN P , CHEN H , et al . Purification and identification of novel myeloperoxidase inhibitory antioxidant peptides from tuna ( Thunnas albacares ) protein hydrolysates [J ] . Molecules , 2022 , 27 ( 9 ): 2681 .
SINGH A , UTOMO PUTRI G A , MITTAL A , et al . Protein hydrolysate from splendid squid ( Loligo formosana ) fins: antioxidant, functional properties, and flavoring profile [J ] . Turkish Journal of Fisheries and Aquatic Sciences , 2022 , 22 ( 6 ): TRJFAS21005 .
KANNAN A , HETTIARACHCHY N S , MARSHALL M , et al . Shrimp shell peptide hydrolysates inhibit human cancer cell proliferation [J ] . Journal of the Science of Food and Agriculture , 2011 , 91 ( 10 ): 1920 - 1924 .
DE LA FUENTE B , PALLARÉS N , BERRADA H , et al . Salmon ( Salmo salar ) side streams as a bioresource to obtain potential antioxidant peptides after applying pressurized liquid extraction (PLE) [J ] . Marine Drugs , 2021 , 19 ( 6 ): 323 .
WANG B , LI L , CHI C F , et al . Purification and characterisation of a novel antioxidant peptide derived from blue mussel ( Mytilus edulis ) protein hydrolysate [J ] . Food Chemistry , 2013 , 138 ( 2-3 ): 1713 - 1719 .
KIM E K , KIM Y S , HWANG J W , et al . Purification of a novel nitric oxide inhibitory peptide derived from enzymatic hydrolysates of Mytilus coruscus [J ] . Fish & Shellfish Immunology , 2013 , 34 ( 6 ): 1416 - 1420 .
CHEN X L , PENG M , LI J , et al . Preparation and functional evaluation of collagen oligopeptide-rich hydrolysate from fish skin with the serine collagenolytic protease from Pseudoalteromonas sp. SM9913 [J ] . Scientific Reports , 2017 , 7 ( 1 ): 15716 .
HERBEL V , SCHÄFER H , WINK M . Recombinant production of snakin-2 (an antimicrobial peptide from tomato) in E . coli and analysis of its bioactivity [J ] . Molecules , 2015 , 20 ( 8 ): 14889 - 14901 .
WU Y Y , MA Y K , LI L H , et al . Preparation and antioxidant activities in vitro of a design ed antioxidant peptide from Pinctada fucata by recombinant Escherichia coli [J ] . Journal of Microbiology and Biotechnology , 2018 , 28 ( 1 ): 1 - 11 .
MOMEN A H , HARZANDI N , HADDADI A , et al . Implementation of a novel self-induced promoter for the expression of pharmaceutical peptides in Escherichia coli : YY (3-36) peptide [J ] . Hormone Molecular Biology and Clinical Investigation , 2020 , 41 ( 1 ): 20180056 .
RAUNIYAR K , AKHONDZADEH S , GĄCIARZ A , et al . Bioactive VEGF-C from E . coli [J ] . Scientific Reports , 2022 , 12 : 18157 .
XIE H L , LI J , LI L , et al . Enhanced proliferation and differentiation of neural stem cells grown on PHA films coated with recombinant fusion proteins [J ] . Acta Biomaterialia , 2013 , 9 ( 8 ): 7845 - 7854 .
曹艳萍 , 单安山 , 马清泉 , 等 . 多拷贝策略在小肽表达中的应用 [J ] . 生物工程学报 , 2011 , 27 ( 5 ): 684 - 689 .
CAO Y P , SHAN A S , MA Q Q , et al . Application of multi-copies in expression of smaller peptides: a review [J ] . Chinese Journal of Biotechnology , 2011 , 27 ( 5 ): 684 - 689 .
黄欣媛 , 邹礼平 , 范红波 . 豆类活性肽PA1b在大肠杆菌中的多拷贝串联表达 [J ] . 江苏农业科学 , 2022 , 50 ( 15 ): 57 - 62 .
HUANG X Y , ZOU L P , FAN H B . Prokaryotic expression of multicopies of legume peptide PA1b in Escherichia coli [J ] . Jiangsu Agricultural Sciences , 2022 , 50 ( 15 ): 57 - 62 .
ZHANG J X , MOVAHEDI A , WEI Z H , et al . High-level SUMO -mediated fusion expression of ABP -dHC-cecropin A from multiple joined genes in Escherichia coli [J ] . Analytical Biochemistry , 2016 , 509 : 15 - 23 .
陈清 , 曾鑫 , 彭永亮 , 等 . 重组串联融合蛋白制备目标多肽的方法 : ZL201910563692.3 [P ] . 2022-05-13 .
CHEN Q , ZENG X , PENG Y L , et al . Method for preparing target polypeptide by recombinant tandem fusion protein ZL201910563692 . 3 [P ] . 2022-05-13 .
ZHANG L C , WEI D D , ZHAN N , et al . Heterologous expression of the novel α-helical hybrid peptide PR-FO in Bacillus subtilis [J ] . Bioprocess and Biosystems Engineering , 2020 , 43 ( 9 ): 1619 - 1627 .
CHEN M L , LIN N F , LIU X D , et al . A novel antimicrobial peptide screened by a Bacillus subtilis expression system, derived from Larimichthys crocea Ferritin H, exerting bactericidal and parasiticidal activities [J ] . Frontiers in Immunology , 2023 , 14 : 1168517 .
SUN W F , WU Y M , DING W W , et al . An auto-inducible expression and high cell density fermentation of Beefy Meaty Peptide with Bacillus subtilis [J ] . Bioprocess and Biosystems Engineering , 2020 , 43 ( 4 ): 701 - 710 .
FU G , YUE J , LI D D , et al . An operator-based expression toolkit for Bacillus subtilis enables fine-tuning of gene expression and biosynthetic pathway regulation [J ] . Proceedings of the National Academy of Sciences of the United States of America , 2022 , 119 ( 11 ): e2119980119 .
LU Z H , YANG S H , YUAN X , et al . CRISPR-assisted multi-dimensional regulation for fine-tuning gene expression in Bacillus subtilis [J ] . Nucleic Acids Research , 2019 , 47 ( 7 ): e40 .
ZHU X Y , LUO H , YU X R , et al . Genome-wide CRISPRi screening of key genes for recombinant protein expression in Bacillus subtilis [J ] . Advanced Science , 2024 , 11 ( 33 ): 2404313 .
ILGEN C , LIN‐CEREGHINO J , CREGG J M . Pichia pastoris [M/OL ] //GELLISSEN G. Production of recombinant proteins . 1st ed . New York : Wiley , 2004 : 143 - 162 [2024-08-08] . https://onlinelibrary.wiley.com/doi/10.1002/3527603670.ch7 https://onlinelibrary.wiley.com/doi/10.1002/3527603670.ch7 .
KARBALAEI M , REZAEE S A , FARSIANI H . Pichia pastoris: a highly successful expression system for optimal synthesis of heterologous proteins [J ] . Journal of Cellular Physiology , 2020 , 235 ( 9 ): 5867 - 5881 .
CAO X T , ZHANG Y , MAO R Y , et al . Design and recombination expression of a novel plectasin-derived peptide MP1106 and its properties against Staphylococcus aureus [J ] . Applied Microbiology and Biotechnology , 2015 , 99 ( 6 ): 2649 - 2662 .
ZHANG K , YANG N , TENG D , et al . Expression and characterization of the new antimicrobial peptide AP138L-arg26 anti Staphylococcus aureus [J ] . Applied Microbiology and Biotechnology , 2024 , 108 ( 1 ): 111 .
CAO J C , DE LA FUENTE-NUNEZ C , OU R W , et al . Yeast-based synthetic biology platform for antimicrobial peptide production [J ] . ACS Synthetic Biology , 2018 , 7 ( 3 ): 896 - 902 .
LI X H , FAN Y , LIN Q , et al . Expression of chromogranin A-derived antifungal peptide CGA-N12 in Pichia pastoris [J ] . Bioengineered , 2020 , 11 ( 1 ): 318 - 327 .
RENYE J A JR , SOMKUTI G A . Nisin-induced expression of a recombinant antihypertensive peptide in dairy lactic acid bacteria [J ] . Biotechnology Letters , 2015 , 37 ( 7 ): 1447 - 1454 .
HUYNH E , LI J L . Generation of Lactococcus lactis capable of coexpressing epidermal growth factor and trefoil factor to enhance in vitro wound healing [J ] . Applied Microbiology and Biotechnology , 2015 , 99 ( 11 ): 4667 - 4677 .
NONGONIERMA A B , O’KEEFFE M B , FITZGERALD R J . Milk protein hydrolysates and bioactive peptides [M/OL ] //MCSWEENEY P L H, O’MAHONY J A. Advanced dairy chemistry: volume 1 B: proteins: applied aspects. New York, NY: Springer New York, 2016 : 417 - 482 [2024-08-10] . https://doi.org/10.1007/978-1-4939-2800-2_15 https://doi.org/10.1007/978-1-4939-2800-2_15 .
LIAO W , JAHANDIDEH F , FAN H B , et al . Egg protein-derived bioactive peptides: preparation, efficacy, and absorption [M/OL ] // Advances in food and nutrition research . New York : Elsevier , 2018 , 85 : 1 - 58 [2024-08-10] . https://linkinghub.elsevier.com/retrieve/pii/S1043452618300068 https://linkinghub.elsevier.com/retrieve/pii/S1043452618300068 .
SMITH G P . Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface [J ] . Science , 1985 , 228 ( 4705 ): 1315 - 1317 .
FLING M , HOROWITZ N H , HEINEMANN S F . The isolation and properties of crystalline tyrosinase from Neurospora [J ] . Journal of Biological Chemistry , 1963 , 238 ( 6 ): 2045 - 2053 .
SUN Y J , SHUKLA G S , WEAVER D , et al . Phage-display selection on tumor histological specimens with laser capture microdissection [J ] . Journal of Immunological Methods , 2009 , 347 ( 1-2 ): 46 - 53 .
YANG M , LIU C W , NIU M C , et al . Phage-display library biopanning and bioinformatic analysis yielded a high-affinity peptide to inflamed vascular endothelium both in vitro and in vivo [J ] . Journal of Controlled Release , 2014 , 174 : 72 - 80 .
GUAN M Q , WANG J , YANG L B , et al . Targeting osteosarcoma vasculature with peptide obtained by phage display [J ] . Contemporary Oncology/ Współczesna Onkologia , 2014 , 18 ( 3 ): 165 - 170 .
ZHOU C , KANG J L , WANG X X , et al . Phage display screening identifies a novel peptide to suppress ovarian cancer cells in vitro and in vivo in mouse models [J ] . BMC Cancer , 2015 , 15 : 889 .
WENG X J , LIAO Q D , LI K H , et al . Screening serum biomarker of knee osteoarthritis using a phage display technique [J ] . Clinical Biochemistry , 2012 , 45 ( 4-5 ): 303 - 308 .
YIN L , LUO Y Z , LIANG B , et al . Specific ligands for classical swine fever virus screened from landscape phage display library [J ] . Antiviral Research , 2014 , 109 : 68 - 71 .
LIU Z P , LIU J F , WANG K , et al . Selection of phage-displayed peptides for the detection of imidacloprid in water and soil [J ] . Analytical Biochemistry , 2015 , 485 : 28 - 33 .
CHEN Y P , SHEN Y Y , GUO X , et al . Transdermal protein delivery by a coadministered peptide identified via phage display [J ] . Nature Biotechnology , 2006 , 24 ( 4 ): 455 - 460 .
DUERR D M , WHITE S J , SCHLUESENER H J . Identification of peptide sequences that induce the transport of phage across the gastrointestinal mucosal barrier [J ] . Journal of Virological Methods , 2004 , 116 ( 2 ): 177 - 180 .
PASQUALINI R , RUOSLAHTI E . Organ targeting in vivo using phage display peptide libraries [J ] . Nature , 1996 , 380 ( 6572 ): 364 - 366 .
ZHANG X C , ZHANG X Y , GAO H L , et al . Phage display derived peptides for Alzheimer’s disease therapy and diagnosis [J ] . Theranostics , 2022 , 12 ( 5 ): 2041 - 2062 .
MANAVALAN B , BASITH S , SHIN T H , et al . MLACP: machine-learning-based prediction of anticancer peptides [J ] . Oncotarget , 2017 , 8 ( 44 ): 77121 - 77136 .
GUPTA S , SHARMA A K , SHASTRI V , et al . Prediction of anti-inflammatory proteins/peptides: an in silico approach [J ] . Journal of Translational Medicine , 2017 , 15 ( 1 ): 7 .
ILYAS S , LEE J , HWANG Y , et al . Deciphering Cathepsin K inhibitors: a combined QSAR, docking and MD simulation based machine learning approaches for drug design [J ] . SAR and QSAR in Environmental Research , 2024 , 35 ( 9 ): 771 - 793 .
GULL S , SHAMIM N , MINHAS F . AMAP: hierarchical multi-label prediction of biologically active and antimicrobial peptides [J ] . Computers in Biology and Medicine , 2019 , 107 : 172 - 181 .
CHO C Y , LEE S S , BANG D M , et al . ChemAP: predicting drug approval with chemical structures before clinical trial phase by leveraging multi-modal embedding space and knowledge distillation [J ] . Scientific Reports , 2024 , 14 ( 1 ): 23010 .
GIGUÈRE S , LAVIOLETTE F , MARCHAND M , et al . Machine learning assisted design of highly active peptides for drug discovery [J ] . PLoS Computational Biology , 2015 , 11 ( 4 ): e1004074 .
JOO S H , PEI D H . Synthesis and screening of support-bound combinatorial peptide libraries with free C-termini: determination of the sequence specificity of PDZ domains [J ] . Biochemistry , 2008 , 47 ( 9 ): 3061 - 3072 .
FANG C , MORIWAKI Y , LI C H , et al . Prediction of antifungal peptides by deep learning with character embedding [J ] . IPSJ Transactions on Bioinformatics , 2019 , 12 : 21 - 29 .
AGRAWAL P , BHALLA S , CHAUDHARY K , et al . In silico approach for prediction of antifungal peptides [J ] . Frontiers in Microbiology , 2018 , 9 : 323 .
BJERRUM E J , SATTAROV B . Improving chemical autoencoder latent space and molecular de novo generation diversity with heteroencoders [J ] . Biomolecules , 2018 , 8 ( 4 ): 131 .
CAO D S , LIU S , XU Q S , et al . Large-scale prediction of drug-target interactions using protein sequences and drug topological structures [J ] . Analytica Chimica Acta , 2012 , 752 : 1 - 10 .
KAO P Y , YANG Y C , CHIANG W Y , et al . Exploring the advantages of quantum generative adversarial networks in generative chemistry [J ] . Journal of Chemical Information and Modeling , 2023 , 63 ( 11 ): 3307 - 3318 .
MÜLLER A T , HISS J A , SCHNEIDER G . Recurrent neural network model for constructive peptide design [J ] . Journal of Chemical Information and Modeling , 2018 , 58 ( 2 ): 472 - 479 .
MA Y , GUO Z Y , XIA B B , et al . Identification of antimicrobial peptides from the human gut microbiome using deep learning [J ] . Nature Biotechnology , 2022 , 40 ( 6 ): 921 - 931 .
KHABBAZ H , KARIMI-JAFARI M H , SABOURY A A , et al . Prediction of antimicrobial peptides toxicity based on their physico-chemical properties using machine learning techniques [J ] . BMC Bioinformatics , 2021 , 22 ( 1 ): 549 .
XIAO X , WANG P , LIN W Z , et al . iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types [J ] . Analytical Biochemistry , 2013 , 436 ( 2 ): 168 - 177 .
WEI L Y , ZHOU C , CHEN H R , et al . ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides [J ] . Bioinformatics , 2018 , 34 ( 23 ): 4007 - 4016 .
丁明珠 , 李炳志 , 王颖 , 等 . 合成生物学重要研究方向进展 [J ] . 合成生物学 , 2020 , 1 ( 1 ): 7 - 28 .
DING M Z , LI B Z , WANG Y , et al . Significant research progress in synthetic biology [J ] . Synthetic Biology Journal , 2020 , 1 ( 1 ): 7 - 28 .
KOWALCZYK R , HARRIS P W R , WILLIAMS G M , et al . Peptide lipidation-a synthetic strategy to afford peptide based therapeutics [M/OL ] . Advances in experimental medicine and biology: peptides and peptide-based biomaterials and their biomedical applications. Cham: Springer , 2017 , 1030 : 185 - 227 . ( 2017-10-29 )[ 2024-08-01 ] . https://doi.org/10.1007/978-3-319-66095-0_9 https://doi.org/10.1007/978-3-319-66095-0_9 .
GU S P . Applying machine learning algorithms for the analysis of biological sequences and medical records [D/OL ] . Electronic Theses and Dissertations. Brookings: South Dakota State University , 2019 , 3666 [ 2024-08-01 ] . https://openprairie.sdstate.edu/etd/3666 https://openprairie.sdstate.edu/etd/3666 .
TRIPATHI N M , BANDYOPADHYAY A . High throughput virtual screening (HTVS) of peptide library: technological advancement in ligand discovery [J ] . European Journal of Medicinal Chemistry , 2022 , 243 : 114766 .
DANG Y , GUAN J J . Nanoparticle-based drug delivery systems for cancer therapy [J ] . Smart Materials in Medicine , 2020 , 1 : 10 - 19 .
0
Views
3
下载量
1
CSCD
Publicity Resources
Related Articles
Related Author
Related Institution
京公网安备11010802024621