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1.中国科学院大连化学物理研究所,生物技术研究部,辽宁 大连 116023
2.大连市能源生物技术重点实验室,辽宁 大连 116023
Received:19 March 2024,
Revised:2024-06-04,
Published:31 October 2024
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禹伟, 高教琪, 周雍进. 一碳生物转化合成有机酸的研究进展[J]. 合成生物学, 2024, 5(5): 1169-1188
YU Wei, GAO Jiaoqi, ZHOU Yongjin. Bioconversion of one carbon feedstocks for producing organic acids[J]. Synthetic Biology Journal, 2024, 5(5): 1169-1188
禹伟, 高教琪, 周雍进. 一碳生物转化合成有机酸的研究进展[J]. 合成生物学, 2024, 5(5): 1169-1188 DOI: 10.12211/2096-8280.2024-023.
YU Wei, GAO Jiaoqi, ZHOU Yongjin. Bioconversion of one carbon feedstocks for producing organic acids[J]. Synthetic Biology Journal, 2024, 5(5): 1169-1188 DOI: 10.12211/2096-8280.2024-023.
有机酸在食品、医药、化工、农业等领域有着广泛的应用。目前有机酸的生产主要以微生物发酵法为主,采用糖类为原料,然而长此以往可能面临“与人争粮”的困境。CO、CO
2
、甲烷、甲醇和甲酸等含有一个碳原子的物质被称为一碳(one carbon,C
1
)资源,其来源广泛且价格低廉,有望成为生物制造的替代原料,且C
1
原料生物转化有助于缓解温室效应、助力“碳中和”目标。本文总结了近年来CO
2
、甲烷和甲醇生物合成3种重要有机酸(3-羟基丙酸、乳酸、琥珀酸)的研究进展,主要论述了C
1
生物利用途径、有机酸的生物合成途径以及代谢工程策略,也讨论了C
1
合成有机酸的挑战及应对措施,并展望了有机酸产业化新路线,尤其是化学催化与生物转化耦合以CO
2
为原料合成有机酸。本综述对于C
1
生物炼制以及有机酸产业升级具有一定的参考意义。
Organic acids
as important platform chemicals
have been widely used in food
pharmaceutical
chemical industries and agriculture. Currently
microbial production of organic acids relies primarily on sugars as feedstocks
which may suffer from the competition with food and arable lands. One carbon (C
1
) molecules such as CO
CO
2
methane
methanol and formic acid are widespread and inexpensive
which are considered as ideal feedstocks for future bio-manufacturing. Bioconversion of C
1
feedstocks toward the production of organic acids helps mitigate greenhouse effect and realize carbon neutrality. Therefore C
1
sources have been regarded as raw materials of third generation biorefinery
and natural C
1
utilizing microbes attracted increasing attention. Although some microorganisms have native biosynthetic pathway of organic acids
the production efficiency is usually lower than expected. This review summarizes the recent progress on the biosynthesis of organic acids (3-hydroxypropionic acid
lactic acid and succinic acid) from C
1
feedstocks using synthetic biology methods. First
the native C
1
utilizing pathways are summarized
including CO
2
CO
metha
ne
methanol and formic acid. Then the metabolic engineering strategies to improve organic acids production were systematically reviewed
including the optimization of rate-limiting enzymes expression
enhancement of the supply of precursor and cofactor
cofactor engineering
and inhibition of the product degradation. In addition
the challenges
solutions
and prospects of C
1
bioconversion to organic acids are also discussed
and coupling chemical catalysis and biological transformation may provide a promising industrial route for organic acids production. In particular
methanol is an ideal C
1
feedstock with many advantages like convenient storage and transportation
high liquid-to-liquid mass transfer efficiency
and it can also be massively produced from CO
2
by “liquid sunshine” technology. Therefore constructing high efficient methanol cell factory may enable organic acids production from CO
2
a carbon neutral production manner. This review may provide a guidance for C
1
biorefinery and industrial bioproduction of organic acids.
2
WERPY T , PETERSEN G . Top value added Chemicals from Biomass—VolumeⅠ: results of screening for potential candidates from sugars and synthesis Gas [R/OL ] . Pacific Northwest National Laboratory National Renewable Energy Laboratory and Department of Energy . ( 2004-08-01 )[ 2024-02-01 ] . https://doi.org/10.2172/15008859 https://doi.org/10.2172/15008859 .
BOZELL J J , PETERSEN G R . Technology development for the production of biobased products from biorefinery carbohydrates—the US Department of Energy’s “Top 10” revisited [J ] . Green Chemistry , 2010 , 12 ( 4 ): 539 - 554 .
张瑞元 , 朱翊凡 , 曾杜文 , 等 . 利用酵母菌生产有机酸的研究进展 [J ] . 生物工程学报 , 2023 , 39 ( 6 ): 2231 - 2247 .
ZHANG R Y , ZHU Y F , ZENG D W , et al . Advances on the production of organic acids by yeast [J ] . Chinese Journal of Biotechnology , 2023 , 39 ( 6 ): 2231 - 2247 .
LOMWONGSOPON P , VARRONE C . Contribution of fermentation technology to building blocks for renewable plastics [J ] . Fermentation , 2022 , 8 ( 2 ): 47 .
张媛媛 , 曾艳 , 王钦宏 . 合成生物制造进展 [J ] . 合成生物学 , 2021 , 2 ( 2 ): 145 - 160 .
ZHANG Y Y , ZENG Y , WANG Q H . Advances in synthetic biomanufacturing [J ] . Synthetic Biology Journal , 2021 , 2 ( 2 ): 145 - 160 .
ZOU L H , OUYANG S P , HU Y L , et al . Efficient lactic acid production from dilute acid-pretreated lignocellulosic biomass by a synthetic consortium of engineered Pseudomonas putida and Bacillus coagulans [J ] . Biotechnology for Biofuels , 2021 , 14 ( 1 ): 227 .
LI Y , HUGENHOLTZ J , CHEN J , et al . Enhancement of pyruvate production by Torulopsis glabrata using a two-stage oxygen supply control strategy [J ] . Applied Microbiology and Biotechnology , 2002 , 60 ( 1-2 ): 101 - 106 .
YU W , CAO X , GAO J Q , et al . Overproduction of 3-hydroxypropionate in a super yeast chassis [J ] . Bioresource Technology , 2022 , 361 : 127690 .
ZHOU Y J , KERKHOVEN E J , NIELSEN J . Barriers and opportunities in bio-based production of hydrocarbons [J ] . Nature Energy , 2018 , 3 ( 11 ): 925 - 935 .
SANTOS CORREA S , SCHULTZ J , LAUERSEN K J , et al . Natural carbon fixation and advances in synthetic engineering for redesigning and creating new fixation pathways [J ] . Journal of Advanced Research , 2023 , 47 : 75 - 92 .
SARMA S , SHARMA S , RUDAKIYA D , et al . Valorization of microalgae biomass into bioproducts promoting circular bioeconomy: a holistic approach of bioremediation and biorefinery [J ] . 3 Biotech , 2021 , 11 ( 8 ): 378 .
VEAUDOR T , BLANC-GARIN V , CHENEBAULT C , et al . Recent advances in the photoautotrophic metabolism of cyanobacteria: biotechnological implications [J ] . Life , 2020 , 10 ( 5 ): 71 .
STEPHENS S , MAHADEVAN R , ALLEN D G . Engineering photosynthetic bioprocesses for sustainable chemical production: a review [J ] . Frontiers in Bioengineering and Biotechnology , 2021 , 8 : 610723 .
BAR-EVEN A , NOOR E , LEWIS N E , et al . Design and analysis of synthetic carbon fixation pathways [J ] . Proceedings of the National Academy of Sciences of the United States of America , 2010 , 107 ( 19 ): 8889 - 8894 .
SCHWANDER T , VON BORZYSKOWSKI L S , BURGENER S , et al . A synthetic pathway for the fixation of carbon dioxide in vitro [J ] . Science , 2016 , 354 ( 6314 ): 900 - 904 .
BOUZON M , PERRET A , LOREAU O , et al . A synthetic alternative to canonical one-carbon metabolism [J ] . ACS Synthetic Biology , 2017 , 6 ( 8 ): 1520 - 1533 .
LUO S S , DIEHL C , HE H , et al . Construction and modular implementation of the THETA cycle for synthetic CO 2 fixation [J ] . Nature Catalysis , 2023 , 6 ( 12 ): 1228 - 1240 .
SARWAR A , LEE E Y . Methanol-based biomanufacturing of fuels and chemicals using native and synthetic methylotrophs [J ] . Synthetic and Systems Biotechnology , 2023 , 8 ( 3 ): 396 - 415 .
ZHAN C J , LI X W , YANG Y K , et al . Strategies and challenges with the microbial conversion of methanol to high-value chemicals [J ] . Biotechnology and Bioengineering , 2021 , 118 ( 10 ): 3655 - 3668 .
ZHAI X X , GAO J Q , LI Y X , et al . Peroxisomal metabolic coupling improves fatty alcohol production from sole methanol in yeast [J ] . Proceedings of the National Academy of Sciences of the United States of America , 2023 , 120 ( 12 ): e2220816120 .
SEMRAU J D , DISPIRITO A A , YOON S . Methanotrophs and copper [J ] . FEMS Microbiology Reviews , 2010 , 34 ( 4 ): 496 - 531 .
KALYUZHNAYA M G , PURI A W , LIDSTROM M E . Metabolic engineering in methanotrophic bacteria [J ] . Metabolic Engineering , 2015 , 29 : 142 - 152 .
BARIK S , PRIETO S , HARRISON S B , et al . Biological production of alcohols from coal through indirect liquefaction [J ] . Applied Biochemistry and Biotechnology , 1988 , 18 ( 1 ): 363 - 378 .
KÖPKE M , MIHALCEA C , LIEW F , et al . 2,3-Butanediol production by acetogenic bacteria, an alternative route to chemical synthesis, using industrial waste gas [J ] . Applied and Environmental Microbiology , 2011 , 77 ( 15 ): 5467 - 5475 .
FERNÁNDEZ-NAVEIRA Á , ABUBACKAR H N , VEIGA M C , et al . Efficient butanol-ethanol (B-E) production from carbon monoxide fermentation by Clostridium carboxidivorans [J ] . Applied Microbiology and Biotechnology , 2016 , 100 ( 7 ): 3361 - 3370 .
LITTY D , KREMP F , MÜLLER V . One substrate, many fates: different ways of methanol utilization in the acetogen Acetobacterium woodii [J ] . Environmental Microbiology , 2022 , 24 ( 7 ): 3124 - 3133 .
HEISKANEN H , VIRKAJÄRVI I , VIIKARI L . The effect of syngas composition on the growth and product formation of Butyribacterium methylotrophicum [J ] . Enzyme and Microbial Technology , 2007 , 41 ( 3 ): 362 - 367 .
SCHUCHMANN K , MÜLLER V . Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria [J ] . Nature Reviews Microbiology , 2014 , 12 ( 12 ): 809 - 821 .
GOYAL N , ZHOU Z , KARIMI I A . Metabolic processes of Methanococcus maripaludis and potential applications [J ] . Microbial Cell Factories , 2016 , 15 ( 1 ): 107 .
HEIDELBERG J F , SESHADRI R , HAVEMAN S A , et al . The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough [J ] . Nature Biotechnology , 2004 , 22 ( 5 ): 554 - 559 .
CROWTHER G J , KOSÁLY G , LIDSTROM M E . Formate as the main branch point for methylotrophic metabolism in Methylobacterium extorquens AM1 [J ] . Journal of Bacteriology , 2008 , 190 ( 14 ): 5057 - 5062 .
CRAMM R . Genomic view of energy metabolism in Ralstonia eutropha H16 [J ] . Journal of Molecular Microbiology and Biotechnology , 2009 , 16 ( 1-2 ): 38 - 52 .
GLEIZER S , BEN-NISSAN R , BAR-ON Y M , et al . Conversion of Escherichia coli to generate all biomass carbon from CO 2 [J ] . Cell , 2019 , 179 ( 6 ): 1255 - 1263.e12 .
GASSLER T , SAUER M , GASSER B , et al . The industrial yeast Pichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO 2 [J ] . Nature Biotechnology , 2020 , 38 ( 2 ): 210 - 216 .
TIAN J Z , DENG W , ZHANG Z W , et al . Discovery and remodeling of Vibrio natriegens as a microbial platform for efficient formic acid biorefinery [J ] . Nature Communications , 2023 , 14 ( 1 ): 7758 .
HENRY C S , BROADBELT L J , HATZIMANIKATIS V . Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3-hydroxypropanoate [J ] . Biotechnology and Bioengineering , 2010 , 106 ( 3 ): 462 - 473 .
KILDEGAARD K R , HALLSTRÖM B M , BLICHER T H , et al . Evolution reveals a glutathione-dependent mechanism of 3-hydroxypropionic acid tolerance [J ] . Metabolic Engineering , 2014 , 26 : 57 - 66 .
SCHWARZ M , KÖPCKE B , WEBER R W , et al . 3-Hydroxypropionic acid as a nematicidal principle in endophytic fungi [J ] . Phytochemistry , 2004 , 65 ( 15 ): 2239 - 2245 .
CHEN Y , BAO J C , KIM I K , et al . Coupled incremental precursor and co-factor supply improves 3-hydroxypropionic acid production in Saccharomyces cerevisiae [J ] . Metabolic Engineering , 2014 , 22 : 104 - 109 .
LI Y , WANG X , GE X Z , et al . High production of 3-hydroxypropionic acid in Klebsiella pneumoniae by systematic optimization of glycerol metabolism [J ] . Scientific Reports , 2016 , 6 : 26932 .
BORODINA I , KILDEGAARD K R , JENSEN N B , et al . Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine [J ] . Metabolic Engineering , 2015 , 27 : 57 - 64 .
JIANG X R , YAN X , YU L P , et al . Hyperproduction of 3-hydroxypropionate by Halomonas bluephagenesis [J ] . Nature Communications , 2021 , 12 ( 1 ): 1513 .
TONG T , TAO Z Y , CHEN X L , et al . A biosynthesis pathway for 3-hydroxypropionic acid production in genetically engineered Saccharomyces cerevisiae [J ] . Green Chemistry , 2021 , 23 ( 12 ): 4502 - 4509 .
ZHAO P , MA C L , XU L D , et al . Exploiting tandem repetitive promoters for high-level production of 3-hydroxypropionic acid [J ] . Applied Microbiology and Biotechnology , 2019 , 103 ( 10 ): 4017 - 4031 .
WANG C , REN J , ZHOU L B , et al . An aldolase-catalyzed new metabolic pathway for the assimilation of formaldehyde and methanol to synthesize 2-keto-4-hydroxybutyrate and 1,3-propanediol in Escherichia coli [J ] . ACS Synthetic Biology , 2019 , 8 ( 11 ): 2483 - 2493 .
GAO J Q , YU W , LI Y X , et al . Engineering co-utilization of glucose and xylose for chemical overproduction from lignocellulose [J ] . Nature Chemical Biology , 2023 , 19 ( 12 ): 1524 - 1531 .
WANG Y P , SUN T , GAO X Y , et al . Biosynthesis of platform chemical 3-hydroxypropionic acid (3-HP) directly from CO 2 in cyanobacterium Synechocystis sp. PCC 6803 [J ] . Metabolic Engineering , 2016 , 34 : 60 - 70 .
NGUYEN D T N , LEE O K , LIM C , et al . Metabolic engineering of type Ⅱ methanotroph, Methylosinus trichosporium OB3b, for production of 3-hydroxypropionic acid from methane via a malonyl-CoA reductase-dependent pathway [J ] . Metabolic Engineering , 2020 , 59 : 142 - 150 .
WU X Y , CAI P , GAO L H , et al . Efficient bioproduction of 3-hydroxypropionic acid from methanol by a synthetic yeast cell factory [J ] . ACS Sustainable Chemistry & Engineering , 2023 , 11 ( 16 ): 6445 - 6453 .
LAN E I , CHUANG D S , SHEN C R , et al . Metabolic engineering of cyanobacteria for photosynthetic 3-hydroxypropionic acid production from CO 2 using Synechococcus elongatus PCC 7942 [J ] . Metabolic Engineering , 2015 , 31 : 163 - 170 .
YANG Y M , CHEN W J , YANG J , et al . Production of 3-hydroxypropionic acid in engineered Methylobacterium extorquens AM1 and its reassimilation through a reductive route [J ] . Microbial Cell Factories , 2017 , 16 ( 1 ): 179 .
YUAN X J , CHEN W J , MA Z X , et al . Rewiring the native methanol assimilation metabolism by incorporating the heterologous ribulose monophosphate cycle into Methylorubrum extorquens [J ] . Metabolic Engineering , 2021 , 64 : 95 - 110 .
YU W , GAO J Q , YAO L , et al . Bioconversion of methanol to 3-hydroxypropionate by engineering Ogataea polymorpha [J ] . Chinese Journal of Catalysis , 2023 , 46 : 84 - 90 .
SHABESTARY K , HERNÁNDEZ H P , MIAO R , et al . Cycling between growth and production phases increases cyanobacteria bioproduction of lactate [J ] . Metabolic Engineering , 2021 , 68 : 131 - 141 .
GARG S , CLOMBURG J M , GONZALEZ R . A modular approach for hi gh-flux lactic acid production from methane in an industrial medium using engineered Methylomicrobium buryatense 5GB1 [J ] . Journal of Industrial Microbiology & Biotechnology , 2018 , 45 ( 6 ): 379 - 391 .
WEFELMEIER K , SCHMITZ S , HAUT A M , et al . Engineering the methylotrophic yeast Ogataea polymorpha for lactate production from methanol [J ] . Frontiers in Bioengineering and Biotechnology , 2023 , 11 : 1223726 .
LI C , TAO F , NI J , et al . Enhancing the light-driven production of D-lactate by engineering cyanobacterium using a combinational strategy [J ] . Scientific Reports , 2015 , 5 : 9777 .
LEE J K , KIM S J , KIM W S , et al . Efficient production of D-lactate from methane in a lactate-tolerant strain of Methylomonas sp. DH-1 generated by adaptive laboratory evolution [J ] . Biotechnology for Biofuels , 2019 , 12 : 234 .
YAMADA R , OGURA K , KIMOTO Y , et al . Toward the construction of a technology platform for chemicals production from methanol: D-lactic acid production from methanol by an engineered yeast Pichia pastoris [J ] . World Journal of Microbiology & Biotechnology , 2019 , 35 ( 2 ): 37 .
SENGUPTA S , JAISWAL D , SENGUPTA A , et al . Metabolic engineering of a fast-growing Cyanobacterium Synechococcus elongatus PCC 11801 for photoautotrophic production of succinic acid [J ] . Biotechnology for Biofuels , 2020 , 13 : 89 .
HUANG C H , SHEN C R , LI H , et al . CRISPR interference (CRISPRi) for gene regulation and succinate production in cyanobacterium S. elongatus PCC 7942 [J ] . Microbial Cell Factories , 2016 , 15 ( 1 ): 196 .
HASUNUMA T , MATSUDA M , KATO Y , et al . Temperature enhanced succinate production concurrent with increased central metabolism turnover in the cyanobacterium Synechocystis sp. PCC 6803 [J ] . Metabolic Engineering , 2018 , 48 : 109 - 120 .
IIJIMA H , WATANABE A , SUKIGARA H , et al . Four-carbon dicarboxylic acid production through the reductive branch of the open cyanobacterial tricar boxylic acid cycle in Synechocystis sp. PCC 6803 [J ] . Metabolic Engineering , 2021 , 65 : 88 - 98 .
NGUYEN D T N , LEE O K , HADIYATI S , et al . Metabolic engineering of the typeⅠmethanotroph Methylomonas sp. DH-1 for production of succinate from methane [J ] . Metabolic Engineering , 2019 , 54 : 170 - 179 .
LIU C S , WANG Q , XIAN M , et al . Dissection of malonyl-coenzyme A reductase of Chloroflexus aurantiacus results in enzyme activity improvement [J ] . PLoS One , 2013 , 8 ( 9 ): e75554 .
LIU C S , DING Y M , ZHANG R B , et al . Functional balance between enzymes in malonyl-CoA pathway for 3-hydroxypropionate biosynthesis [J ] . Metabolic Engineering , 2016 , 34 : 104 - 111 .
ZHOU Y J , BUIJS N A , ZHU Z W , et al . Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories [J ] . Nature Communications , 2016 , 7 : 11709 .
YU T , ZHOU Y J , HUANG M T , et al . Reprogramming yeast metabolism from alcoholic fermentation to lipogenesis [J ] . Cell , 2018 , 174 ( 6 ): 1549 - 1558.e14 .
SCHNEIDER K , ASAO M , CARTER M S , et al . Rhodobacter sphaeroides uses a reductive route via propionyl coenzyme A to assimilate 3-hydroxypropionate [J ] . Journal of Bacteriology , 2012 , 194 ( 2 ): 225 - 232 .
ZHOU S F , ASHOK S , KO Y , et al . Development of a deletion mutant of Pseudomonas denitrificans that does not degrade 3-hydroxypropionic acid [J ] . Applied Microbiology and Biotechnology , 2014 , 98 ( 10 ): 4389 - 4398 .
NGUYEN-VO T P , RYU H , SAUER M , et al . Improvement of 3-hydroxypropionic acid tolerance in Klebsiella pneumoniae by novel transporter YohJK [J ] . Bioresource Technology , 2022 , 346 : 126613 .
NGUYEN-VO T P , LIANG Y X , SANKARANARAYANAN M , et al . Development of 3-hydroxypropionic-acid-tolerant strain of Escherichia coli W and role of minor global regulator yieP [J ] . Metabolic Engineering , 2019 , 53 : 48 - 58 .
CHUN A Y , YUNXIAO L , ASHOK S , et al . Elucidation of toxicity of organic acids inhibiting growth of Escherichia coli W [J ] . Biotechnology and Bioprocess Engineering , 2014 , 19 ( 5 ): 858 - 865 .
LI J , ZHU K , MIAO L , et al . Simultaneous improvement of limonene production and tolerance in Yarrowia lipolytica through tolerance engineering and evolutionary engineering [J ] . ACS Synthetic Biology , 2021 , 10 ( 4 ): 884 - 896 .
YANG M M , AN Y F , ZABED H M , et al . Random mutagenesis of Clostridium butyricum strain and optimization of biosynthesis process for enhanced production of 1,3-propanediol [J ] . Bioresource Technology , 2019 , 284 : 188 - 196 .
ZHANG W , GENG A L . Improved ethanol production by a xylose-fermenting recombinant yeast strain constructed through a modified genome shuffling method [J ] . Biotechnology for Biofuels , 2012 , 5 ( 1 ): 46 .
ZHU Y , ZHOU C , WANG Y , et al . Transporter engineering for microbial manufacturing [J ] . Biotechnology Journal , 2020 , 15 ( 9 ): e1900494 .
LIN Z L , ZHANG Y , WANG J Q . Engineering of transcriptional regulators enhances microbial stress tolerance [J ] . Biotechnology Advances , 2013 , 31 ( 6 ): 986 - 991 .
CHO J S , KIM G B , EUN H M , et al . Designing microbial cell factories for the production of chemicals [J ] . JACS Au , 2022 , 2 ( 8 ): 1781 - 1799 .
NGUYEN-VO T P , KO S , RYU H , et al . Systems evaluation reveals novel transporter YohJK renders 3-hydroxypropionate tolerance in Escherichia coli [J ] . Scientific Reports , 2020 , 10 ( 1 ): 19064 .
LIU D , HWANG H J , OTOUPAL P B , et al . Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate [J ] . Metabolic Engineering , 2023 , 78 : 72 - 83 .
VINK E T H , RÁBAGO K R , GLASSNER D A , et al . Applications of life cycle assessment to NatureWorks™ polylactide (PLA) production [J ] . Polymer Degradation and Stability , 2003 , 80 ( 3 ): 403 - 419 .
DING X W , RONG J , PAN Z P , et al . De novo multienzyme synthetic pathways for lactic acid production [J ] . ACS Catalysis , 2024 , 14 ( 7 ): 4665 - 4674 .
UPADHYAYA B P , DEVEAUX L C , CHRISTOPHER L P . Metabolic engineering as a tool for enhanced lactic acid production [J ] . Trends in Biotechnology , 2014 , 32 ( 12 ): 637 - 644 .
HENARD C A , SMITH H , DOWE N , et al . Bioconversion of methane to lactate by an obligate methanotrophic bacterium [J ] . Scientific Reports , 2016 , 6 : 21585 .
YU W , GAO J Q , ZHAI X X , et al . Screening neutral sites for metabolic engineering of methylotrophic yeast Ogataea polymorpha [J ] . Synthetic and Systems Biotechnology , 2021 , 6 ( 2 ): 63 - 68 .
CAI P , DUAN X P , WU X Y , et al . Recombination machinery engineering facilitates metabolic engineering of the industrial yeast Pichia pastoris [J ] . Nucleic Acids Research , 2021 , 49 ( 13 ): 7791 - 7805 .
WANG M , LUAN G D , LU X F . Systematic identification of a neutral site on chromosome of Synechococcus sp. PCC7002, a promising photosynthetic chassis strain [J ] . Journal of Biotechnology , 2019 , 295 : 37 - 40 .
PORRO D , BIANCHI M M , BRAMBILLA L , et al . Replacement of a metabolic pathway for large-scale production of lactic acid from engineered yeasts [J ] . Applied and Environmental Microbiology , 1999 , 65 ( 9 ): 4211 - 4215 .
HIDESE R , MATSUDA M , OSANAI T , et al . Malic enzyme facilitates D-lactate production through increased pyruvate supply during anoxic dark fermentation in Synechocystis sp. PCC 6803 [J ] . ACS Synthetic Biology , 2020 , 9 ( 2 ): 260 - 268 .
BIANCHI M M , BRAMBILLA L , PROTANI F , et al . Efficient homolactic fermentation by Kluyveromyces lactis strains defective in pyruvate utilization and transformed with the heterologous LDH gene [J ] . Applied and Environmental Microbiology , 2001 , 67 ( 12 ): 5621 - 5625 .
ANGERMAYR S A , VAN DER WOUDE A D , CORREDDU D , et al . Exploring metabolic engineering design principles for the photosynthetic production of lactic acid by Synechocystis sp. PCC6803 [J ] . Biotechnology for Biofuels , 2014 , 7 : 99 .
BAEK S H , KWON E Y , KIM Y H , et al . Metabolic engineering and adaptive evolution for efficient production of D-lactic acid in Saccharomyces cerevisiae [J ] . Applied Microbiology and Biotechnology , 2016 , 100 ( 6 ): 2737 - 2748 .
PACHECO A , TALAIA G , SÁ-PESSOA J , et al . Lactic acid production in Saccharomyces cerevisiae is modulated by expression of the monocarboxylate transporters Jen1 and Ady2 [J ] . FEMS Yeast Research , 2012 , 12 ( 3 ): 375 - 381 .
WAKAMATSU M , TOMITAKA M , TANI T , et al . Improvement of ethanol production from D-lactic acid by constitutive expression of lactate transporter Jen1p in Saccharomyces cerevisiae [J ] . Bioscience, Biotechnology, and Biochemistry , 2013 , 77 ( 5 ): 1114 - 1116 .
GUIARD B. Structure, expression and regulation of a nuclear gene encoding a mitochondrial protein: the yeast L(+)-lactate cytochrome c oxidoreductase (cytochrome b2) [J ] . The EMBO Journal , 1985 , 4 ( 12 ): 3265 - 3272 .
MOURIER A , VALLORTIGARA J , YOBOUE E D , et al . Kinetic activation of yeast mitochondrial D-lactate dehydrogenase by carboxylic acids [J ] . Biochimica et Biophysica Acta (BBA) - Bioenergetics , 2008 , 1777 ( 10 ): 1283 - 1288 .
BAUMSCHABL M , ATA Ö , MITIC B M , et al . Conversion of CO 2 into organic acids by engineered autotrophic yeast [J ] . Proceedings of the National Academy of Sciences of the United States of America , 2022 , 119 ( 47 ): e2211827119 .
TONG T , CHEN X L , HU G P , et al . Engineering microbial metabolic energy homeostasis for improved bioproduction [J ] . Biotechnology Advances , 2021 , 53 : 107841 .
LEE J Y , KANG C D , LEE S H , et al . Engineering cellular redox balance in Saccharomyces cerevisiae for improved production of L-lactic acid [J ] . Biotechnology and Bioengineering , 2015 , 112 ( 4 ): 751 - 758 .
KOMATI REDDY G , LINDNER S N , WENDISCH V F . Metabolic engineering of an ATP-neutral Embden-Meyerhof-Parnas pathway in Corynebacterium glutamicum : growth restoration by an adaptive point mutation in NADH dehydrogenase [J ] . Applied and Environmental Microbiology , 2015 , 81 ( 6 ): 1996 - 2005 .
QI H S , LI S S , ZHAO S M , et al . Model-driven redox pathway manipulation for improved isobutanol production in Bacillus subtilis complemented with experimental validation and metabolic profiling analysis [J ] . PLoS One , 2014 , 9 ( 4 ): e93815 .
MULLINEAUX C W . Electron transport and light-harvesting switches in cyanobacteria [J ] . Frontiers in Plant Science , 2014 , 5 : 7 .
LIU X T , ZHAO G , SUN S J , et al . Biosynthetic pathway and metabolic engineering of succinic acid [J ] . Frontiers in Bioengineering and Biotechnology , 2022 , 10 : 843887 .
LIU Y P , ZHENG P , SUN Z H , et al . Economical succinic acid production from cane molasses by Actinobacillus succinogenes [J ] . Bioresource Technology , 2008 , 99 ( 6 ): 1736 - 1742 .
LEE P C , LEE S Y , HONG S H , et al . Batch and continuous cultures of Mannheimia succiniciproducens MBEL55E for the production of succinic acid from whey and corn steep liquor [J ] . Bioprocess and Biosystems Engineering , 2003 , 26 ( 1 ): 63 - 67 .
MEYNIAL-SALLES I , DOROTYN S , SOUCAILLE P . A new process for the continuous production of succinic acid from glucose at high yield, titer, and productivity [J ] . Biotechnology and Bioengineering , 2008 , 99 ( 1 ): 129 - 135 .
KUHNERT P , SCHOLTEN E , HAEFNER S , et al . Basfia succiniciproducens gen. nov., sp. nov., a new member of the family Pasteurellaceae isolated from bovine rumen [J ] . International Journal of Systematic and Evolutionary Microbiology , 2010 , 60 ( Pt 1 ): 44 - 50 .
LEE S J , LEE D Y , KIM T Y , et al . Metabolic engineering of Escherichia coli for enhanced production of succinic acid, based on genome comparison and in silico gene knockout simulation [J ] . Applied and Environmental Microbiology , 2005 , 71 ( 12 ): 7880 - 7887 .
LITSANOV B , BROCKER M , BOTT M . Toward homosuccinate fermentation: metabolic engineering of Corynebacterium glutamicum for anaerobic production of succinate from glucose and formate [J ] . Applied and Environmental Microbiology , 2012 , 78 ( 9 ): 3325 - 3337 .
CUI Z Y , GAO C J , LI J J , et al . Engineering of unconventional yeast Yarrowia lipolytica for efficient succinic acid production from glycerol at low pH [J ] . Metabolic Engineering , 2017 , 42 : 126 - 133 .
LAI M J , TSAI J C , LAN E I . CRISPRi-enhanced direct photosynthetic conversion of carbon dioxide to succinic acid by metabolically engineered cyanobacteria [J ] . Bioresource Technology , 2022 , 366 : 128131 .
HASUNUMA T , MATSUDA M , KONDO A . Improved sugar-free succinate production by Synechocystis sp. PCC 6803 following identification of the limiting steps in glycogen catabolism [J ] . Metabolic Engineering Communications , 2016 , 3 : 130 - 141 .
LAN E I , WEI C T . Metabolic engineering of cyanobacteria for the photosynthetic production of succinate [J ] . Metabolic Engineering , 2016 , 38 : 483 - 493 .
LU S Y , EITEMAN M A , ALTMAN E . Effect of CO 2 on succinate production in dual-phase Escherichia coli fermentations [J ] . Journal of Biotechnology , 2009 , 143 ( 3 ): 213 - 223 .
COTELESAGE J J H , PUTTICK J , GOLDIE H , et al . How does an enzyme recognize CO 2 ? [J ] . The International Journal of Biochemistry & Cell Biology , 2007 , 39 ( 6 ): 1204 - 1210 .
XIAO M Y , ZHU X N , BI C H , et al . Improving succinate productivity by engineering a cyanobacterial CO 2 concentrating system (CCM) in Escherichia coli [J ] . Biotechnology Journal , 2017 , 12 ( 9 ): 1700199 .
PRICE G D , WOODGER F J , BADGER M R , et al . Identification of a SulP-type bicarbonate transporter in marine cyanobacteria [J ] . Proceedings of the National Academy of Sciences of the United States of America , 2004 , 101 ( 52 ): 18228 - 18233 .
SHIBATA M , KATOH H , SONODA M , et al . Genes essential to sodium-dependent bicarbonate transport in cyanobacteria: function and phylogenetic analysis [J ] . Journal of Biological Chemistry , 2002 , 277 ( 21 ): 18658 - 18664 .
ZHU L W , ZHANG L , WEI L N , et al . Collaborative regulation of CO 2 transport and fixation during succinate production in Escherichia coli [J ] . Scientific Reports , 2015 , 5 : 17321 .
DURALL C , KUKIL K , HAWKES J A , et al . Production of succinate by engineered strains of Synechocystis PCC 6803 overexpressing phosphoenolpyruvate carboxylase and a glyoxylate shunt [J ] . Microbial Cell Factories , 2021 , 20 ( 1 ): 39 .
TAPSCOTT T , GUARNIERI M T , HENARD C A . Development of a CRISPR/Cas9 system for Methylococcus capsulatus in vivo gene editing [J ] . Applied and Environmental Microbiology , 2019 , 85 ( 11 ): e00340-19 .
MO X H , ZHANG H , WANG T M , et al . Establishment of CRISPR interference in Methylorubrum extorquens and application of rapidly mining a new phytoene desaturase involved in carotenoid biosynthesis [J ] . Applied Microbiology and Biotechnology , 2020 , 104 ( 10 ): 4515 - 4532 .
SCHULTENKÄMPER K , BRITO L F , LÓPEZ M G , et al . Establishment and application of CRISPR interference to affect sporulation, hydrogen peroxide detoxification, and mannitol catabolism in the methylotrophic thermophile Bacillus methanolicus [J ] . Applied Microbiology and Biotechnology , 2019 , 103 ( 14 ): 5879 - 5889 .
GAO J Q , GAO N , ZHAI X X , et al . Recombination machinery engineering for precise genome editing in methylotrophic yeast Ogataea polymorpha [J ] . iScience , 2021 , 24 ( 3 ): 102168 .
ZHAI X X , JI L L , GAO J Q , et al . Characterizing methanol metabolism-related promoters for metabolic engineering of Ogataea polymorpha [J ] . Applied Microbiology and Biotechnology , 2021 , 105 ( 23 ): 8761 - 8769 .
NIELSEN J , KEASLING J D . Engineering cellular metabolism [J ] . Cell , 2016 , 164 ( 6 ): 1185 - 1197 .
LIEBAL U W , FABRY B A , RAVIKRISHNAN A , et al . Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha [J ] . BMC Biotechnology , 2021 , 21 ( 1 ): 23 .
KING Z A , LU J , DRÄGER A , et al . BiGG Models: a platform for integrating, standardizing and sharing genome-scale models [J ] . Nucleic Acids Research , 2016 , 44 ( D1 ): D515 - D522 .
SHIH C F , ZHANG T , LI J H , et al . Powering the future with liquid sunshine [J ] . Joule , 2018 , 2 ( 10 ): 1925 - 1949 .
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