Progress in metabolic engineering of microorganisms for the utilization of formate

CHENG Zhenzhen; ZHANG Jian; GAO Cong; LIU Liming; CHEN Xiulai

doi:10.12211/2096-8280.2023-032

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Progress in metabolic engineering of microorganisms for the utilization of formate

Invited Review | 更新时间：2025-03-20

- Progress in metabolic engineering of microorganisms for the utilization of formate
- Synthetic Biology Journal Vol. 4, Issue 4, Pages: 756-778(2023)
- 作者机构：
  
  1.江南大学，食品科学与技术国家重点实验室，江苏无锡 214122
  2.江南大学，食品安全国际合作联合实验室，江苏无锡 214122
- 作者简介：
- 基金信息：
- DOI：10.12211/2096-8280.2023-032
  CLC： Q81
- Received：17 April 2023，
  
  Revised：2023-05-22，
  
  Published：31 August 2023
- 稿件说明：
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程真真，张健，高聪，刘立明，陈修来. 代谢工程改造微生物利用甲酸研究进展［J］. 合成生物学， 2023， 4（4）： 756-778

CHENG Zhenzhen， ZHANG Jian， GAO Cong， LIU Liming， CHEN Xiulai. Progress in metabolic engineering of microorganisms for the utilization of formate［J］. Synthetic Biology Journal， 2023， 4（4）： 756-778
程真真，张健，高聪，刘立明，陈修来. 代谢工程改造微生物利用甲酸研究进展［J］. 合成生物学， 2023， 4（4）： 756-778 DOI： 10.12211/2096-8280.2023-032.

CHENG Zhenzhen， ZHANG Jian， GAO Cong， LIU Liming， CHEN Xiulai. Progress in metabolic engineering of microorganisms for the utilization of formate［J］. Synthetic Biology Journal， 2023， 4（4）： 756-778 DOI： 10.12211/2096-8280.2023-032.

摘要

微生物利用甲酸生产高附加值产品，是实现碳资源回收利用与绿色产业发展的重要策略之一。然而，在微生物利用甲酸过程中存在甲酸利用效率偏低、细胞生长速率缓慢、目标代谢物产量不高等问题。为了解决上述问题，本文从甲酸利用的微生物、代谢路径与代谢工程策略三个方面，系统总结分析了代谢工程改造微生物利用甲酸的研究进展。在甲酸利用微生物方面，概述了天然甲酸利用微生物的代谢特点以及模式微生物的代谢工程改造潜能；在甲酸利用代谢路径方面，梳理了天然的甲酸利用路径、重构与优化的甲酸利用路径与人工的甲酸利用路径的关键步骤、能量/还原力消耗与特点；在甲酸利用代谢工程策略方面，阐述了提高甲酸同化效率与改善甲酸利用微生物细胞生长的关键方法。最后，从甲酸利用的微生物、代谢路径与代谢工程策略三个方面，展望了微生物利用甲酸的发展方向，为甲酸生物经济的发展奠定了基础。

Abstract

One carbon resources are expected to become the next generation raw materials for the production of high value-added chemicals to achieve the recycling and utilization of carbon resources and promote the development of green industries. To achieve this aim

microbial utilization of formate produced from various one carbon resources

is one of the important strategies to build a green and sustainable platform for one-carbon biomanufacturing. However

there are many problems in the process of microbial utilization of formate

such as the low efficiency of formate utilization

the slow growth rate of formate-utilizing microorganisms

and the low yield of target metabolites and so on. To solve these problems

in this paper we systematically summarize and analyze the research progress in metabolic engineering of microorganisms for the utilization of formate from following three aspects: formate-utilizing microorganisms

metabolic pathways and metabolic engineering strategies. For formate-utilizing microorganisms

we summarize the metabolic characteristics and applicative advantages of natural formate-utilizing microorganisms

as well as the potential and advantages of model microorganisms for the application of metabolic engineering. For formate-utilizing metabolic pathways

we review the key steps

energy/reducing power consumption and characteristics of natural formate-utilizing pathways

reconstruction and optimization of formate-utilizing pathways and artificial formate-utilizing pathways

and then discuss the potential of metabolic engineering modification of these pathways. For formate-utilizing metabolic engineering strategies

we describe the useful strategies to improve the metabolic efficiency of formate assimilation pathways

such as optimizing the expression level of pathway genes

engineering key pathway enzymes

blocking the competitive pathways

reconstructing cofactor regeneration system

and modular pathway engineering

and then summarize the key approaches to improve the cell growth of formate-utilizing microorganisms

such as adaptive laboratory evolution

enhancing the cell growth of formatotrophs and improving the ability of microorganisms to synergistically utilize formate. Finally

we prospect the developmental direction of microbial utilization of formate from three aspects of formate-utilizing microorganisms

metabolic pathways and metabolic engineering strategies

which would lay the foundation for the development of formate bio-economy.

关键词

Keywords

references

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School of Nanoscience and Engineering， University of Chinese Academy of Sciences

College of Materials Science and Opto-Electronic Technology， University of Chinese Academy of Sciences

Department of Bioengineering， College of Chemistry and Chemical Engineering， the North University of China

Key Laboratory for Potato Biology of Yunnan Province， The CAAS-YNNU-YINMORE Joint Academy of Potato Science， Yunnan Normal University

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